Commits

Commits on Mar 19, 2026

Update flag summary in RNA-seq case study
danielecook
authored

Commits on Mar 5, 2026

Commits on Feb 11, 2026

Update training data details

kishwarshafin
authored and
copybara-github
committed
Update version references from 1.9 to 1.10 in documentation and templates.

kishwarshafin
authored and
copybara-github
committed

Commits on Feb 9, 2026

Update DeepVariant Dockerfiles to version 1.10.0.

kishwarshafin
authored and
copybara-github
committed
Automated Code Change

Genomics team in Google Health
authored and
copybara-github
committed

Commits on Feb 7, 2026

[DeepTrio] Prepares 1.10.0 release

lucasbrambrink
authored and
copybara-github
committed

Commits on Feb 5, 2026

Add `checkpoint_json` flag to `postprocess_variants`

kishwarshafin
authored and
copybara-github
committed
Automated g4 rollback of changelist 832210557

akolesnikov
authored and
copybara-github
committed

Commits on Feb 4, 2026

When DBG pruning is disabled remove only isolated vertices (those with zero in-degree and zero out-degree) from the graph.

akolesnikov
authored and
copybara-github
committed

Commits on Feb 3, 2026

Update DeepVariant build and run prerequisites.

danielecook
authored and
copybara-github
committed

Commits on Jan 31, 2026

Automated Code Change

Genomics team in Google Health
authored and
copybara-github
committed

Commits on Jan 30, 2026

Read small model configuration from `model.example_info.json`.

kishwarshafin
authored and
copybara-github
committed

Commits on Jan 29, 2026

Update `run_deepsomatic` to use `model.example_info.json` files

kishwarshafin
authored and
copybara-github
committed

Commits on Jan 27, 2026

Update dv config for rnaseq model

danielecook
authored and
copybara-github
committed
[postprocess_variants] Recomputes variant filters in `haplotypes.maybe_resolve_conflicting_variants` if the variant genotype has been changed

lucasbrambrink
authored and
copybara-github
committed
Update run_deepvariant.py to support RNA-seq models.

danielecook
authored and
copybara-github
committed

Commits on Jan 26, 2026

Automated Code Change

Genomics team in Google Health
authored and
copybara-github
committed

Commits on Jan 23, 2026

Update RNA-seq case study

danielecook
authored and
copybara-github
committed
Update DeepVariant version to 1.10

kishwarshafin
authored and
copybara-github
committed
Internal change

kishwarshafin
authored and
copybara-github
committed
Add flag to disable graph pruning.

akolesnikov
authored and
copybara-github
committed

Commits on Jan 21, 2026

[small model] Use the Jax backend & improve inference calls. make_example runtimes improvements (WGS: 47m -> 44m, PacBio 34m -> 31m, ONT 51m -> 49m). Modest but measurable.

lucasbrambrink
authored and
copybara-github
committed

Commits on Jan 20, 2026

[DeepTrio] Redirect stderr to stdout for subprocess calls in run_deeptrio. This allows capturing `time` outputs in logs.

lucasbrambrink
authored and
copybara-github
committed

Commits on Jan 17, 2026

Automated Code Change

Genomics team in Google Health
authored and
copybara-github
committed

Commits on Jan 14, 2026

Updating version: VG 1.67.0 and kmc 3.2.4.

pichuan
authored and
copybara-github
committed
[DeepVariant] Pin `google-api-python-client` pip version to `2.187.0`

lucasbrambrink
authored and
copybara-github
committed