Erasmus Medical Center
- 18 followers
- Rotterdam, The Netherlands
- https://erasmusmc-bioinformatics.github.io/
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WeFaceNano
WeFaceNano PublicNanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).
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galaxytools-emc
galaxytools-emc PublicTool Shed repositories maintained and developed by the Erasmus University Medical Center, following best practices guidelines set out by the Intergalactic Utilities Commission https://wiki.galaxypr…
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ARGalaxy-docker
ARGalaxy-docker PublicDocker image that sets up a Galaxy with the Immune Repertoire and SHM pipelines.
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EMC-MetaMicrobes
EMC-MetaMicrobes PublicNextflow pipeline to detect and classify microbial reads in sequencing data from human samples.
Repositories
- HMF-json2report Public
Create docx or txt reports from HMF json files. https://erasmusmc-bioinformatics.github.io/HMF-json2report/
ErasmusMC-Bioinformatics/HMF-json2report’s past year of commit activity - spyCNV Public
A modern copy number variation (CNV) analysis tool that produces standalone interactive HTML reports from TSO500 sequencing data. Built with genome-spy, inspired by reconCNV. Usable as both a CLI and a Python library.
ErasmusMC-Bioinformatics/spyCNV’s past year of commit activity - EMC-SigProfiler Public
A Python CLI tool and library built on top of SigProfiler for generating self-contained HTML reports from VCF's or TSV's.
ErasmusMC-Bioinformatics/EMC-SigProfiler’s past year of commit activity - molclass Public
Moleculair classification tool, search for a variant and get results from many sources
ErasmusMC-Bioinformatics/molclass’s past year of commit activity - AILMENT_ML_GUT Public
ML framework for metatranscriptomics and metagenomics for species and tumour traits
ErasmusMC-Bioinformatics/AILMENT_ML_GUT’s past year of commit activity - EMC-MetaMicrobes Public
Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.
ErasmusMC-Bioinformatics/EMC-MetaMicrobes’s past year of commit activity
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