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MahiKhan5360/README.md

Typing SVG


ORCID LinkedIn GitHub Email


⚡ At a Glance

class SaifulIslamMahi:
    """
    Biomedical Engineer | Computational Neuroscience Enthusiast | Medical AI Researcher
    Islamic University, Kushtia, Bangladesh  ·
    """

    def __init__(self):
        self.name          = "Saiful Islam Mahi"
        self.affiliation   = "Bio-Imaging Research Lab, Islamic University, Bangladesh"
        self.advisor       = "Assoc. Prof. Dr. Md. Khairul Islam"
       

        self.breakthroughs = [
            "First asymmetric Caputo fractional Wilson–Cowan neural mass model (qE ≠ qI)",
            "Novel resting-state fMRI biomarker q̂E = β/2  (r=0.993, N=50 HCP subjects)",
            "NMDA–GABAergic double dissociation via resting-state fMRI  [first ever]",
        ]

        self.published_in  = ["PLOS ONE (2025)"]
        self.in_prep       = ["bioRxiv manuscript → 2026"]
        self.conferences   = ["IEEE CS Bangladesh Chapter Summer Symposium 2025 (Presenter)"]

    def current_mission(self) -> str:
        return (
            "Decode the brain's fractional-order dynamics and translate them "
            "into clinically actionable neuroimaging biomarkers."
        )

    def next_destination(self) -> str:
        return "PhD in Computational Neuroscience / Medical AI  🎯"


📄 PLOS ONE Publication (2025)

Tanjin R, Al-Amin M, Etee JM, Siddika A, Siddiki A, Mahi SI, et al.
"An evaluation of Roluperidone as a promising repurposing candidate for Alzheimer's Disease: A Computational Investigation."
PLOS ONE 20(12): e0338211, 2025. doi:10.1371/journal.pone.0338211

Applied the full computational drug-discovery pipeline — from molecular docking and ADMET profiling to molecular dynamics simulation — to evaluate Roluperidone as an Alzheimer's repurposing candidate.


🚀 Project Portfolio

Python · Nibabel · Nilearn · SciPy

End-to-end batch pipeline for N=50 HCP subjects across 4 resting-state runs. Extracts CIFTI timeseries (59,412 grayordinates → 200 Schaefer parcels), applies Welch PSD + OLS log-log regression in the 0.01–0.10 Hz BOLD band.

r=0.993 40,000 PSD estimates Schaefer-200

Python · NumPy · SciPy · Matplotlib

Grünwald–Letnikov Caputo derivative from scratch (M=300, convergence < 0.3%). Computed 141×141 Matignon stability atlas. Identified 3 novel oscillatory regimes including premature Hopf destabilisation (−18.3% shift).

Fractional Calculus Stability Atlas Hopf Bifurcation

Python · SciPy · Pandas · Nilearn

Merges Control-network q̂E with NIH Toolbox scores. Partial Pearson correlations across 5 cognitive domains (working memory, fluid intelligence, cognitive flexibility, episodic memory, response inhibition) with Benjamini–Hochberg FDR correction.

Partial Correlation FDR Correction 5 Domains

PyTorch · U-Net · MONAI · OpenCV

U-Net with transfer learning on the ISIC 2018 dermoscopy benchmark. Class-weighted Dice loss handles foreground–background imbalance.

>95% accuracy Early Melanoma Detection Transfer Learning

TensorFlow · Transformers · BioPython

Transformer-GRU-CNN hybrid for error localisation in DNA-based digital storage. Handles substitution, insertion, and deletion noise. Presented at IEEE CS BDC Summer Symposium 2025.

Hybrid Architecture DNA Storage IEEE Presented

PyRx · NAMD · Gaussian · PyMOL

Full computational pipeline: target identification → molecular docking → ADMET profiling → molecular dynamics simulation → lead optimisation for Roluperidone as an AD candidate.

PLOS ONE Published MD Simulation ADMET


🛠️ Technical Stack

Languages

Python MATLAB C++ Bash

Deep Learning & ML

PyTorch TensorFlow Keras scikit-learn MONAI

Neuroimaging & Computational Neuroscience

Nibabel Nilearn MNE HCP

Computational Biology

PyMOL NAMD PyRx Gaussian ChemDraw

Scientific Computing

NumPy SciPy Pandas Matplotlib


📊 GitHub Stats


GitHub Streak


Activity Graph


🌐 Let's Collaborate

I'm always open to:

🔬 Joint research in computational neuroscience or medical AI
📚 PhD opportunities in neuro-AI, brain imaging, or medical image analysis
🏥 Industry collaborations applying AI to clinical diagnostics
🤝 Open-source projects in neuroimaging or biomedical deep learning


LinkedIn Email ORCID GitHub



"The brain speaks in fractional time. I'm learning to listen."


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