Feature/35366/variantlocation#47
Merged
Merged
Conversation
bshand
approved these changes
Dec 4, 2023
bshand
left a comment
bshand
left a comment
Contributor
There was a problem hiding this comment.
This all looks fine to me, thank you.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
What?
Added variant location across the BRCA labs. Also amended regex to extract exonic variants and populate sequencevarianttype in genotype.
Why?
Above information was present in raw records and needs to be extracted and populated in genotype.
Testing?
Added and updated tests, Denominators counts before and after changes have been checked for each lab.