Skip to content

spock74/IRkernel

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

101 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Native R kernel for IPython

This is still experimental and unreliable. Your code should be safe, since IPython handles saving and loading notebooks in another process, but you'll lose all your variables if it crashes.

##Installing

You'll need zmq development headers to compile rzmq, as well curl headers for R devtools. On a recent Ubuntu/Debian installation, you can get these with:

sudo apt-get install libzmq3-dev libcurl4-openssl-dev

or with homebrew:

brew install zmq
# or upgrade
brew update
brew upgrade zmq

If using MacPorts on OS X, make sure an X server is intalled, open a terminal and do the following:

  • sudo port install zmq

  • Direct the compiler to use MacPorts libraries using

     export CPATH=/opt/local/include
     export LIBRARY_PATH=/opt/local/lib
    
  • Start R in the same terminal, and proceed as below:

We need development versions of several packages from Github for now, due to recent fixes. First, you need to make sure you have the devtools R package available. If you don't, at the R console type:

install.packages("devtools")

Then, you can install the necessary development dependencies with:

# Need RCurl for install_github
install.packages('RCurl')
library(devtools)
install_github('armstrtw/rzmq')
install_github("takluyver/IRdisplay")
install_github("takluyver/IRkernel")

# Only if you have IPython 3 or above installed:
IRkernel::installspec()

You'll also need IPython. If you already have a Python environment set up, install IPython using your preferred tools. If not, installing Anaconda is the quickest way to get everything you need.

Running the notebook

If you have IPython 3 installed, you can create a notebook and switch to IRkernel from the dropdown menu. In IPython 2.x, you will need to start the notebook with this command:

ipython notebook --KernelManager.kernel_cmd="['R', '-e', 'IRkernel::main()', '--args', '{connection_file}']"

You can also substitute 'qtconsole' or 'console' for 'notebook' in this command.

About

R kernel for IPython

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

 
 
 

Contributors