* Initial commit to new Leeds CRC code

* Leeds CRC refactoring QA final code

* rubocop fixes

* rubocop fixes

* corrected script command

* Review comment , moved batch level code

* PR review comments changes

* More comments added

* PR review comments changes

* remove testscope and teststatus

* Fake barts handler to link Lynch data

* removed 'barts' name from importer, replaced with 'adhoc'

* Added provided X26 for adhoc Lynch data

* Corrected name for record in tests

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Co-authored-by: lauramccluskey <laura.mccluskey3@nhs.net>
Co-authored-by: Nichola Imeson <nichola.imeson@nhs.net>

* re-adding changes after erroneous git rebase

* rucocop changes added

* fixed failing test

* made code review changes, removed zygosity

* made code review changes, removed zygosity

* adding final change from PR and fix teststatus issue

* importer wasn't assigning moleculsr testing type - corrected this

* made PR changes, rubocop fixes, added tests

* making test_type mapping case insensitive

* removed barts mapping, added extra line to constants

* Rubocop indentation fixes

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Co-authored-by: shilpigoel <shilpi.goel1@nhs.net>

* inital commit of rewriting St George's importer for new format

* updates to George's importer for new format

* continue rewriting st georges importer

* continue rewriting  st georges importer

* update tests

* tidy up code

* rubocop changes

* more code tidying

* more working progress for st george importer

* update process_variants

* continue work on st georges importer new format

* add genes from panels

* added filter to import  only files with HBOC in filename

* added filter to import  only files with HBOC in filename

* add rubocop changes

* continue updating st georges code and tests

* more tidying of st georges code

* more tidying of st georges code

* add more comments to st georges code

* add more comments to st georges code

* update to unittests

* add more unittests

* add more unittests

* added in old st georges importer and additional import method for old format data

* added in check for SRI starting letter, added back in the old st georges tests

* Corrected 'gene (other)' typo in handler and tests

* update code to get the panel genes

* fixed old st george importer tests

* added a couple of comments

* fix errors

* made fixes to regular expressions and r208 processing

* fixed tests

* update test names

* tidy code and run rubocop

* run rubocop on st georges tests

* removed counter logic from duplicate_genotype_targeted

* rubocop and fix rule difference

* fix rule difference and update unittests

* run rubocop

* update tests

* update tests

* update tests

* made some rubocop fixes

* final rubocop fixes

* fix errors

* update st georges rules

* tidy code and fix todos

* fix errors

* make changes from code review

* make changes from code review

* fix bug and make changes from code review

* make changes from code review

* make changes from code review and remove zygosity

* remove unnecessary parameter

* match name of class in tests to name of file

* make changes from code review

* updates to rules

* added in BRCA_INGER_MAP to constants, fixed teststatus issue

* rubocop corrections

* Rewrote Test status method for full screen cases

* added rule change and relevant test to it as per review comment

* made test type mapping case insensitive

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Co-authored-by: Nichola Imeson <nichola.imeson@nhs.net>
Co-authored-by: Nichola Imeson <nichiola.imeson@nhs.net>
Co-authored-by: shilpigoel <shilpi.goel1@nhs.net>

* importer fix for old st george hander

* removed binding.pry

* Added test

* corrected whitespace issues

* Addition to process_fields test

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Co-authored-by: shilpigoel <shilpi.goel1@nhs.net>